Stem-loop sequence eca-mir-130b

Accession

MI0012748 (change log)

Description

Equus caballus miR-130b stem-loop

Gene family

MIPF0000034; mir-130

Literature search

1 open access papers mention eca-mir-130b
(1 sentences)

Stem-loop

         c    ca       cc         acugugg   gc 
5' ggccug cuga  cucuuuc  uguugcacu       gcu  u
   |||||| ||||  |||||||  |||||||||       |||   
3' ccggac ggcu  gggaaag  guaacguga       cga  g
         u    ac       ua         -------   ag 

Deep sequencing

86 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr8: 3383110-3383190 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-130b

• eca-mir-301b: chr8: 3382779-3382875 [+]
• eca-mir-130b: chr8: 3383110-3383190 [+]

Database links

• EntrezGene:MIR130B
• miRBase Tracker:MI0012748

Mature sequence eca-miR-130b

• Accession: MIMAT0012996
• Sequence: 50 - cagugcaaugaugaaagggcau - 71
• Deep sequencing: 69 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).