Stem-loop sequence eca-mir-27a

Accession

MI0012739 (change log)

Description

Equus caballus miR-27a stem-loop

Gene family

MIPF0000036; mir-27

Literature search

2 open access papers mention eca-mir-27a
(2 sentences)

Stem-loop

   cu    a  a         ug  u       -  g  ca 
5'   gggg gc gggcuuagc  cu gugagca gg uc  c
     |||| || |||||||||  || ||||||| || ||   
3'   cccc cg cuugaaucg  ga cacuugu cu ag  a
   -g    c  c         gu  -       a  g  cc 

Deep sequencing

78628 reads, 5.55e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr7: 44930014-44930090 [+]
• Overlapping transcripts:

  antisense

  ENSECAT00000009158 ; IER2-201; intron 5

Clustered miRNAs

< 10kb from eca-mir-27a

• eca-mir-23a: chr7: 44929817-44929889 [+]
• eca-mir-27a: chr7: 44930014-44930090 [+]
• eca-mir-24-1: chr7: 44930163-44930230 [+]
• eca-mir-8992: chr7: 44932141-44932243 [+]

Database links

• EntrezGene:MIR27A
• miRBase Tracker:MI0012739

Mature sequence eca-miR-27a

• Accession: MIMAT0012988
• Sequence: 51 - uucacaguggcuaaguuccgc - 71
• Deep sequencing: 78618 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).