Stem-loop sequence eca-mir-214

Accession

MI0012714 (change log)

Description

Equus caballus miR-214 stem-loop

Gene family

MIPF0000062; mir-214

Literature search

2 open access papers mention eca-mir-214
(17 sentences)

Stem-loop

   u          aca            aacau 
5'  cugccugucu   cuugcugugcag     c
    ||||||||||   ||||||||||||     c
3'  gacggacaga   ggacgacauguc     g
   u          cac            cacuc 

Deep sequencing

2809 reads, 100 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr5: 8098955-8099019 [-]
• Overlapping transcripts:

  sense

  ENSECAT00000028181 ; eca-mir-214-201; exon 1

  antisense

  ENSECAT00000029159 ; DNM3-204; intron 14

Clustered miRNAs

< 10kb from eca-mir-214

• eca-mir-199a: chr5: 8104732-8104810 [-]
• eca-mir-214: chr5: 8098955-8099019 [-]

Database links

• EntrezGene:MIR214
• miRBase Tracker:MI0012714

Mature sequence eca-miR-214

• Accession: MIMAT0012963
• Sequence: 44 - acagcaggcacagacaggcagu - 65
• Deep sequencing: 2342 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).