Stem-loop sequence eca-mir-199a

Accession

MI0012712 (change log)

Description

Equus caballus miR-199a stem-loop

Gene family

MIPF0000040; mir-199

Literature search

2 open access papers mention eca-mir-199a
(5 sentences)

Stem-loop

       c   gcc       u        c   --uca  ac 
5' gcuc guc   ccagugu cagacuac ugu     gg  a
   |||| |||   ||||||| |||||||| |||     ||   
3' cggg cag   gguuaca gucugaug aca     cc  a
       u   auu       c        -   uguug  gu 

Deep sequencing

73690 reads, 4.95e+03 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr5: 8104732-8104810 [-]
• Overlapping transcripts:

  sense

  ENSECAT00000027624 ; eca-mir-199a-201; exon 1

  antisense

  ENSECAT00000029159 ; DNM3-204; intron 14

Clustered miRNAs

< 10kb from eca-mir-199a

• eca-mir-199a: chr5: 8104732-8104810 [-]
• eca-mir-214: chr5: 8098955-8099019 [-]

Database links

• EntrezGene:MIR199A
• miRBase Tracker:MI0012712

Mature sequence eca-miR-199a-5p

• Accession: MIMAT0012960
• Sequence: 11 - cccaguguucagacuaccuguuc - 33
• Deep sequencing: 14590 reads, 1 experiments
• Evidence: not experimental

Mature sequence eca-miR-199a-3p

• Accession: MIMAT0012961
• Sequence: 50 - acaguagucugcacauugguua - 71
• Deep sequencing: 59099 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).