Stem-loop sequence eca-mir-135b

Accession

MI0012704 (change log)

Description

Equus caballus miR-135b stem-loop

Gene family

MIPF0000028; mir-135

Literature search

3 open access papers mention eca-mir-135b
(21 sentences)

Stem-loop

        --                   cau          uugcug 
5' gcucu  gcuguggccuauggcuuuu   uccuauguga      u
   |||||  |||||||||||||||||||   ||||||||||       
3' cgggg  ugacaucggguaccgaaaa   gggauguacu      u
        ag                   -uc          caaauc 

Deep sequencing

284 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr5: 1903337-1903425 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR135B
• miRBase Tracker:MI0012704

Mature sequence eca-miR-135b

• Accession: MIMAT0012952
• Sequence: 15 - uauggcuuuucauuccuauguga - 37
• Deep sequencing: 274 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).