Stem-loop eca-mir-671

Accession

MI0012701

Description

Equus caballus eca-mir-671 precursor miRNA

Gene family

MIPF0000358; mir-671

Sequence

125 reads, 19 reads per million, 1 experiments

ggccaggaagaggAGGAAGCCCUGGAGGGGCUGGAGgugauggauguuuuccUCCGGUUCUCAGGGCUCCACCucuuccgggcc
((((.((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).))))

Structure

    a        A   A      GA           u  ug 
ggcc ggaagagg GGA GCCCUG  GGGGCUGGAGg ga  g
|||| |||||||| ||| ||||||  ||||||||||| ||  a
ccgg ccuucuCC CCU CGGGAC  UCUUGGCCUcc uu  u
    g        A   -      --           u  ug 

Annotation confidence High

Genome context

chr4: 102828539-102828622 [+]

Mature eca-miR-671-5p

• Accession: MIMAT0012948
• Description: Equus caballus eca-miR-671-5p mature miRNA
• Sequence: 14 - AGGAAGCCCUGGAGGGGCUGGAG - 36
• Evidence: not_experimental

Mature eca-miR-671-3p

• Accession: MIMAT0012949
• Description: Equus caballus eca-miR-671-3p mature miRNA
• Sequence: 53 - UCCGGUUCUCAGGGCUCCACC - 73
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131