Stem-loop sequence eca-mir-429

Accession

MI0012675 (change log)

Description

Equus caballus miR-429 stem-loop

Gene family

MIPF0000019; mir-8

Literature search

2 open access papers mention eca-mir-429
(2 sentences)

Stem-loop

   --     u -          cg       cugcg 
5'   gggcg c uuaccagaca  guuagau     u
     ||||| | ||||||||||  |||||||      
3'   ccugc g aauggucugu  uaaucug     c
   ua     c u          ca       ucuuc 

Deep sequencing

7 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr2: 48453025-48453091 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-429

• eca-mir-200b: chr2: 48455071-48455139 [-]
• eca-mir-200a: chr2: 48454404-48454493 [-]
• eca-mir-3548: chr2: 48454387-48454515 [+]
• eca-mir-429: chr2: 48453025-48453091 [-]

Database links

• EntrezGene:MIR429
• miRBase Tracker:MI0012675

Mature sequence eca-miR-429

• Accession: MIMAT0012919
• Sequence: 42 - uaauacugucugguaaugccg - 62
• Deep sequencing: 7 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).