Stem-loop sequence eca-mir-200a

Accession

MI0012665 (change log)

Description

Equus caballus miR-200a stem-loop

Gene family

MIPF0000019; mir-8

Literature search

2 open access papers mention eca-mir-200a
(11 sentences)

Stem-loop

   c    - c   g        -             c    uuuc     
5'  uggg c ccu ugggcauc uuaccggacagug ugga    ucgg 
    |||| | ||| |||||||| ||||||||||||| ||||    ||| c
3'  accc g gga acuuguag aauggucugucac aucu    agcu 
   c    a u   a        c             a    ---c     

Deep sequencing

35 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr2: 48454404-48454493 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-200a

• eca-mir-200b: chr2: 48455071-48455139 [-]
• eca-mir-200a: chr2: 48454404-48454493 [-]
• eca-mir-3548: chr2: 48454387-48454515 [+]
• eca-mir-429: chr2: 48453025-48453091 [-]

Database links

• EntrezGene:MIR200A
• miRBase Tracker:MI0012665

Mature sequence eca-miR-200a

• Accession: MIMAT0012909
• Sequence: 54 - uaacacugucugguaacgaugu - 75
• Deep sequencing: 33 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).