Stem-loop sequence bmo-mir-2731-2

Accession

MI0012180 (change log)

Previous IDs

bmo-mir-2731b

Description

Bombyx mori miR-2731-2 stem-loop

Gene family

MIPF0000795; mir-2731

Stem-loop

   aa    -aac     c a  c --a    au      --         a 
5'   accu    agaug g ga c   uggu  guggaa  auaaaagcc c
     ||||    ||||| | || |   ||||  ||||||  |||||||||  
3'   ugga    uuuac c cu g   acca  caccuu  uauuuuugg c
   -g    gccc     a -  a aaa    --      uc         c 

Deep sequencing

387 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004581845.1: 72378-72468 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-2731-2

• bmo-mir-2731-2: NW_004581845.1: 72378-72468 [-]
• bmo-mir-2731-1: NW_004581845.1: 71154-71244 [-]

Database links

• miRBase Tracker:MI0012180

Mature sequence bmo-miR-2731

• Accession: MIMAT0012608
• Previous IDs: bmo-miR-2731a
• Sequence: 13 - ugcgagaccaugguaugugga - 33
• Deep sequencing: 712 reads, 3 experiments
• Evidence: experimental; cloned [1], RT-PCR [1]
• Database links:
  • RNAcentral:URS00004541FB_7091

References

1. PMID:19699294 "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome" Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J Genomics. 94:438-444(2009).