Stem-loop sequence hsa-mir-2682

Accession

MI0012063 (change log)

Symbol

HGNC:MIR2682

Description

Homo sapiens miR-2682 stem-loop

Literature search

3 open access papers mention hsa-mir-2682
(3 sentences)

Stem-loop

   -------ac u       ---      u    c        a   uuc  a     aauc 
5'          c uccugaa   agaggu gggg aggcagug cug   ag cgucc    u
            | |||||||   |||||| |||| |||||||| |||   || |||||     
3'          g aggauuu   ucuccg cccu ucugucgc gac   uc gcagg    c
   aaacucuga c       ccg      u    -        -   uuc  c     guuu 

Deep sequencing

451 reads, 0 reads per million, 44 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr1: 98045242-98045351 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000095698 ; DPYD-001; intron 10

  ENST00000370192 ; DPYD-001; intron 10

Clustered miRNAs

< 10kb from hsa-mir-2682

• hsa-mir-137: chr1: 98046070-98046171 [-]
• hsa-mir-2682: chr1: 98045242-98045351 [-]

Database links

• EntrezGene:MIR2682
• HGNC:MIR2682
• RNAcentral:URS000075F0A0_9606
• miRBase Tracker:MI0012063

Mature sequence hsa-miR-2682-5p

• Accession: MIMAT0013517
• Previous IDs: hsa-miR-2682
• Sequence: 23 - caggcagugacuguucagacguc - 45
• Deep sequencing: 399 reads, 24 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS0000366551_9606
• Predicted targets:
  • TargetMiner:hsa-miR-2682-5p
  • TargetScanVert:hsa-miR-2682-5p
  • miRDB:hsa-miR-2682-5p

Mature sequence hsa-miR-2682-3p

• Accession: MIMAT0013518
• Previous IDs: hsa-miR-2682*
• Sequence: 60 - cgccucuucagcgcugucuucc - 81
• Deep sequencing: 37 reads, 17 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetMiner:hsa-miR-2682-3p
  • TargetScanVert:hsa-miR-2682-3p
  • miRDB:hsa-miR-2682-3p

References

1. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).
3. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).