Stem-loop mtr-MIR2111m

Accession

MI0011844

Description

Medicago truncatula mtr-MIR2111m precursor miRNA

Gene family

MIPF0000754; MIR2111

Literature search

2 open access papers mention mtr-MIR2111m
(8 sentences)

Sequence

uuaauugguuaaggauagggUAAUCUGCAUCCUGAGGUUUAgagcaacauuuguguuguaucuaGUCCUCGGGAUACAGAUUACUuuuuucuuaauaccaaugugaa
...((((((((((((.(((((((((((.(((((((((.(((((((((((....)))))).))))).))))))))).))))))))))).))))))..)))))).....

Structure

--uua      --      u           C         U     -      u 
     auuggu  uaagga agggUAAUCUG AUCCUGAGG UUAga gcaaca u
     ||||||  |||||| ||||||||||| ||||||||| ||||| ||||||  
     uaacca  auucuu uuUCAUUAGAC UAGGGCUCC Gaucu uguugu u
aagug      ua      u           A         U     a      g 

Annotation confidence Not enough data

Genome context

chr7: 16637685-16637791 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from mtr-MIR2111m

Mature mtr-miR2111m-5p

• Accession: MIMAT0013297
• Description: Medicago truncatula mtr-miR2111m-5p mature miRNA
• Sequence: 21 - UAAUCUGCAUCCUGAGGUUUA - 41
• Evidence: experimental ; 454 [1], Illumina [2]

Mature mtr-miR2111m-3p

• Accession: MIMAT0026928
• Description: Medicago truncatula mtr-miR2111m-3p mature miRNA
• Sequence: 65 - GUCCUCGGGAUACAGAUUACU - 85
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


2. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105