Stem-loop sequence dsi-mir-1003

Accession

MI0011732 (change log)

Description

Drosophila simulans miR-1003 stem-loop

Gene family

MIPF0000923; mir-1003

Stem-loop

      -  gaa  u    agaag        c         uu  cu u 
5' gca cu   gc gcgc     guggguau uggaugugg  gg  c g
   ||| ||   || ||||     |||||||| |||||||||  ||  |  
3' cgu ga   ug cgcg     cacuuaua auuuacacu  cc  g g
      c  --g  c    ---ga        c         cu  ug c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (dsim_caf1; GCA_000259055.1): chr3R: 20323140-20323229 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011732

Mature sequence dsi-miR-1003-5p

• Accession: MIMAT0012427
• Previous IDs: dsi-miR-1003*
• Sequence: 21 - guggguaucuggaugugguugg - 42
• Evidence: experimental; Illumina [1]

Mature sequence dsi-miR-1003-3p

• Accession: MIMAT0012428
• Previous IDs: dsi-miR-1003
• Sequence: 55 - ucucacauuuacauauucacag - 76
• Evidence: experimental; Illumina [1]

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).