Stem-loop dps-mir-2540

Accession

MI0011675

Description

Drosophila pseudoobscura dps-mir-2540 precursor miRNA

Sequence

uguauauuucaaauguuuuuaguucUUCAGAUCGCCAGGUAUUAUAUGuaauacuuaaaaaccgUGUUAUACCGGUCAUCUGAAGAauuauuuaccacagaaagcaaca
(((...((((....((...(((((((((((((.(((.(((((.(((((..............))))).)))))))).)))))))))))))...))....))))...)))

Structure

   aua    aaau  uuu             C   A     U     uaauac 
ugu   uuuc    gu   uaguucUUCAGAU GCC GGUAU AUAUG      u
|||   ||||    ||   ||||||||||||| ||| ||||| |||||       
aca   aaag    ca   auuaAGAAGUCUA UGG CCAUA UGUgc      u
   acg    acac  uuu             C   -     U     caaaaa 

Annotation confidence Not enough data

Genome context

XL_group1e: 8367333-8367441 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from dps-mir-2540

Mature dps-miR-2540-5p

• Accession: MIMAT0012336
• Description: Drosophila pseudoobscura dps-miR-2540-5p mature miRNA
• Sequence: 26 - UUCAGAUCGCCAGGUAUUAUAUG - 48
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2540-3p

• Accession: MIMAT0012337
• Description: Drosophila pseudoobscura dps-miR-2540-3p mature miRNA
• Sequence: 65 - UGUUAUACCGGUCAUCUGAAGA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9