Stem-loop sequence dme-mir-307b

Accession

MI0011577 (change log)

Previous IDs

dme-mir-307-as

Description

Drosophila melanogaster miR-307b stem-loop

Gene family

MIPF0000937; mir-307as

Literature search

2 open access papers mention dme-mir-307b
(9 sentences)

Stem-loop

   u    uc ug auacuc    c    a c          gga  u       gauaccau 
5'  aguu  g  g      uguc ugcu u gcucacucaa   gg ugugaug        a
    ||||  |  |      |||| |||| | ||||||||||   || |||||||         
3'  ucaa  c  c      acag acga a ugagugaguu   cc acacuac        u
   u    -u gu -guaaa    a    a c          gga  c       aauaaagc 

Deep sequencing

54 reads, 0 reads per million, 23 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2R: 9621234-9621353 [+]
• Overlapping transcripts:

  antisense

  FBtr0088501 ; Mmp2-RB; intron 3

Clustered miRNAs

< 10kb from dme-mir-307b

• dme-mir-307b: chr2R: 9621234-9621353 [+]
• dme-mir-307a: chr2R: 9621251-9621338 [-]

Database links

• RNAcentral:URS00007AD56E_7227
• miRBase Tracker:MI0011577

Mature sequence dme-miR-307b-5p

• Accession: MIMAT0012194
• Previous IDs: dme-miR-307-as*
• Sequence: 32 - ucacucaaggagguugugaugg - 53
• Deep sequencing: 17 reads, 13 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000005047F_7227
• Predicted targets:
  • microrna.org:dme-miR-307b-5p

Mature sequence dme-miR-307b-3p

• Accession: MIMAT0012195
• Previous IDs: dme-miR-307-as
• Sequence: 73 - ucacacccagguugagugagu - 93
• Deep sequencing: 28 reads, 12 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002E96C1_7227
• Predicted targets:
  • microrna.org:dme-miR-307b-3p

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).