Stem-loop bdi-MIR166a

Accession

MI0011570

Description

Brachypodium distachyon bdi-MIR166a precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention bdi-MIR166a
(21 sentences)

Sequence

uuuucaugguugucgagggGAAUGACGCCGGGUCUGAAAGaaagaagggggcacgccgggaaugacagcgguucccuagcucuuUCGGACCAGGCUUCAUUCCCCaugacucgaccaugg
....(((((((((((.(((((((((.(((.(((((((((((....(((((((.(((.(.......).))))))))))...))))))))))).))).))))))))).))))..))))))).

Structure

uuuu       --    a         C   G           aaga       a   c gg 
    caugguu  gucg gggGAAUGA GCC GGUCUGAAAGa    agggggc cgc g  a
    |||||||  |||| ||||||||| ||| |||||||||||    ||||||| ||| |  a
    guaccag  cagu CCCCUUACU CGG CCAGGCUuucu    ucccuug gcg c  u
---g       cu    a         U   A           -cga       -   a ag 

Annotation confidence Not enough data

Genome context

1: 6574374-6574493 [+]

Mature bdi-miR166a-3p

• Accession: MIMAT0012185
• Description: Brachypodium distachyon bdi-miR166a-3p mature miRNA
• Sequence: 85 - UCGGACCAGGCUUCAUUCCCC - 105
• Evidence: experimental ; Illumina [3]

Mature bdi-miR166a-5p

• Accession: MIMAT0026922
• Description: Brachypodium distachyon bdi-miR166a-5p mature miRNA
• Sequence: 20 - GAAUGACGCCGGGUCUGAAAG - 40
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19585143
   Conserved microRNAs and their targets in model grass species Brachypodium distachyon
   "Unver T, Budak H"
   "Planta (2009) 230:659-669


2. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


3. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443