Stem-loop sequence hsa-mir-2277

Accession

MI0011284 (change log)

Symbol

HGNC:MIR2277

Description

Homo sapiens miR-2277 stem-loop

Literature search

4 open access papers mention hsa-mir-2277
(5 sentences)

Stem-loop

   gu     cu  g        g     u a      c     agcgcu 
5'   gcuuc  gc ggcugagc cgggc g gcgcug caguc      c
     |||||  || |||||||| ||||| | |||||| |||||       
3'   cgaag  cg ccggcucg guccg c cgcgac gucgg      a
   cu     --  g        -     u c      a     aauuac 

Deep sequencing

1648 reads, 0 reads per million, 126 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr5: 93620696-93620788 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000254102 ; KIAA0825-001; intron 19

  ENST00000427991 ; KIAA0825-202; intron 18

  ENST00000513200 ; KIAA0825-001; intron 19

Database links

• EntrezGene:MIR2277
• HGNC:MIR2277
• RNAcentral:URS000075D14E_9606
• miRBase Tracker:MI0011284

Mature sequence hsa-miR-2277-5p

• Accession: MIMAT0017352
• Sequence: 18 - agcgcgggcugagcgcugccaguc - 41
• Deep sequencing: 1260 reads, 119 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00000D6C3F_9606
• Predicted targets:
  • TargetMiner:hsa-miR-2277-5p
  • TargetScanVert:hsa-miR-2277-5p
  • miRDB:hsa-miR-2277-5p

Mature sequence hsa-miR-2277-3p

• Accession: MIMAT0011777
• Previous IDs: hsa-miR-2277
• Sequence: 59 - ugacagcgcccugccuggcuc - 79
• Deep sequencing: 384 reads, 93 experiments
• Evidence: experimental; 454 [1]
• Predicted targets:
  • TargetMiner:hsa-miR-2277-3p
  • TargetScanVert:hsa-miR-2277-3p
  • miRDB:hsa-miR-2277-3p
  • microrna.org:hsa-miR-2277-3p

References

1. PMID:19508715 "Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing" Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup N, Moller S, Krogh A, Litman T BMC Med Genomics. 2:35(2009).
2. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).