Stem-loop osa-MIR2118b

Accession

MI0011252

Description

Oryza sativa osa-MIR2118b precursor miRNA

Gene family

MIPF0000745; MIR2118

Literature search

28 open access papers mention osa-MIR2118b
(170 sentences)

Sequence

2 reads, 1 reads per million, 1 experiments

augagcgaggaagaggaagaaagagguagucuaagagcagugggaaugggaacauagaggaaaaaugagcucucaguguucacuucuggaaguggagguggauauuugucucaguauuuUUCCCGAUGCCUCCCAUUCCUAucguucuuaggugcuccuuccucuuccuuucagcucau
(((((((((((((((((((...(((.((.(((((((((.((((((((((((.(((.(.(((((((((((..(..((((((((((((((....)))))))))))))).).))))...)))))))).)))..)))))))))))).)))))))))))))))))))))))))))...))))))

Structure

      ---             aaa   g  g         a            -a   a a       ---    cu uc              g 
augagc   gaggaagaggaag   gag ua ucuaagagc gugggaauggga  cau g ggaaaaa   ugag  c  aguguucacuucug a
||||||   |||||||||||||   ||| || ||||||||| ||||||||||||  ||| | |||||||   ||||  |  ||||||||||||||  
uacucg   uuccuucuccuuc   cuc gu ggauucuug uAUCCUUACCCU  GUA C CCUUuuu   acuc  g  uuauagguggaggu a
      acu             ---   -  -         c            CC   G -       aug    -u -u              g 

Annotation confidence Not enough data

Genome context

Chr4: 21645285-21645463 [-]

Clustered miRNAs

11 other miRNAs are < 10 kb from osa-MIR2118b

Mature osa-miR2118b

• Accession: MIMAT0011741
• Description: Oryza sativa osa-miR2118b mature miRNA
• Sequence: 120 - UUCCCGAUGCCUCCCAUUCCUA - 141
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440