Stem-loop cbr-mir-238

Accession

MI0010976

Description

Caenorhabditis briggsae cbr-mir-238 precursor miRNA

Gene family

MIPF0000862; mir-238

Sequence

uucuucuuauccucaugaauaugacuguuuggguguccuuggauguaaaaagcuauaaaucuguuaagauugcUUUGUACUCCGAUGCCAUCCACauggucugacgacaagaaga
.(((((((.((.(((.......((((((.((((((.(.(((((.(((.(((((....(((((....)))))))))).)))))))).).)))))).))))))))).)).)))))))

Structure

u       a  c   ugaauau      u      u c     u   a     uaua     g 
 ucuucuu uc uca       gacugu ugggug c uugga gua aaagc    aaucu u
 ||||||| || |||       |||||| |||||| | ||||| ||| |||||    |||||  
 agaagaa ag agu       cuggua ACCUAC G AGCCU CAU UUUcg    uuaga u
-       c  c   -------      C      C U     -   G     ----     a 

Annotation confidence Not enough data

Genome context

chrIII: 14445069-14445183 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-238

Mature cbr-miR-238

• Accession: MIMAT0011465
• Description: Caenorhabditis briggsae cbr-miR-238 mature miRNA
• Sequence: 74 - UUUGUACUCCGAUGCCAUCCAC - 95
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074