miRBase entry: gma-MIR2109

Stem-loop gma-MIR2109


Accession
MI0010579
Description
Glycine max gma-MIR2109 precursor miRNA
Gene family
MIPF0001000; MIR2109

Literature search
10 open access papers mention gma-MIR2109
(21 sentences)

Sequence

ggUGCGAGUGUCUUCGCCUCUGagagagauacuaugagaucucaagccucGGAGGCGUAGAUACUCACACC
((((.((((((((.((((((((((.(((((........)))))....)))))))))).)))))))).))))

Structure
    C        U          ---a     acu 
ggUG GAGUGUCU CGCCUCUGag    gagau   a
|||| |||||||| ||||||||||    |||||    
CCAC CUCAUAGA GCGGAGGcuc    cucua   u
    A        U          cgaa     gag 


Annotation confidence Not enough data
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Genome context
chr4: 36995886-36995956 [-]

Database links

Mature gma-miR2109-5p

Accession MIMAT0010086
Description Glycine max gma-miR2109-5p mature miRNA
Sequence 3 - UGCGAGUGUCUUCGCCUCUG - 22
Evidence experimental
cloned [1], 454 [2], Illumina [3-4]

Mature gma-miR2109-3p

Accession MIMAT0032101
Description Glycine max gma-miR2109-3p mature miRNA
Sequence 51 - GGAGGCGUAGAUACUCACACC - 71
Evidence experimental
Illumina [5-6]

References

  1. PubMed ID: 19084500
    Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
    "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
    "Biochem Biophys Res Commun (2009) 378:799-803

  2. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  3. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506

  4. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553

  5. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153

  6. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562