Stem-loop mtr-MIR2089

Accession

MI0010546

Description

Medicago truncatula mtr-MIR2089 precursor miRNA

Gene family

MIPF0000703; MIR1510

Literature search

1 open access papers mention mtr-MIR2089
(2 sentences)

Sequence

gcaggcaaccaagcauucaagaucuagagcaagauuuauuUUACCUAUUCCACCAAUUCCAUugauccugguuucaagaucugaaagugaaucugggauguauAGGAUUGGUGUAAUAGGUAAAAcaacacuugcacuagaagcaaaauauauauuuguuugc
((((((((..............(((((.(((((..((.(((((((((((.(((((((((.((..(((((((.((((...........)))).)))))))..)).))))))))).))))))))))).))..))))).)))))..............))))))))

Structure

        ccaagcauucaaga     a     au  a           C         C  ug       u    agau 
gcaggcaa              ucuag gcaag  uu uuUUACCUAUU CACCAAUUC AU  auccugg uuca    c
||||||||              ||||| |||||  || ||||||||||| ||||||||| ||  ||||||| ||||    u
cguuuguu              agauc cguuc  aa AAAAUGGAUAA GUGGUUAGG ua  uaggguc aagu    g
        uauauauaaaacga     a     ac  c           U         A  ug       u    gaaa 

Annotation confidence Not enough data

Genome context

chr5: 18629430-18629592 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2089

Mature mtr-miR2089-5p

• Accession: MIMAT0010040
• Description: Medicago truncatula mtr-miR2089-5p mature miRNA
• Sequence: 41 - UUACCUAUUCCACCAAUUCCAU - 62
• Evidence: experimental ; Illumina [1], Northern [1]

Mature mtr-miR2089-3p

• Accession: MIMAT0010041
• Description: Medicago truncatula mtr-miR2089-3p mature miRNA
• Sequence: 104 - AGGAUUGGUGUAAUAGGUAAAA - 125
• Evidence: experimental ; Illumina [1], Northern [1]

References

1. PubMed ID: 19068109
   High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
   Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T
   BMC Genomics (2008) 9:593