Stem-loop mtr-MIR1510a

Accession

MI0010542

Description

Medicago truncatula mtr-MIR1510a precursor miRNA

Gene family

MIPF0000703; MIR1510

Literature search

1 open access papers mention mtr-MIR1510a
(2 sentences)

Sequence

aaaguugcuauugcaauugUUGUCUUACCCAUUCCUCCCAucccauaaaucuauuauauguacuccaucaucauauggauccacucuugucuuaugauaauagagucgcaugauaggaaucuuggauCGGAGGAUUAGGUAAAACAACuauugcauuaggcuuu
(((((..(((.((((((.(((((.(((((...((((((.((((......((((((((.((.((((.((.((((((.((((........)))))))))).)).)))))).))))))))......)))).))))))...))))).))))).)))))).))))))))

Structure

     ug   u      u     C     CAU      C    cauaaa        a  u    c  c      u    cca 
aaagu  cua ugcaau gUUGU UUACC   UCCUCC Aucc      ucuauuau ug acuc au aucaua ggau   c
|||||  ||| |||||| ||||| |||||   |||||| ||||      |||||||| || |||| || |||||| ||||    
uuucg  gau acguua CAACA AAUGG   AGGAGG uagg      ggauagua gc ugag ua uaguau ucug   u
     --   u      u     A     AUU      C    uucuaa        c  -    a  a      -    uuc 

Annotation confidence Not enough data

Genome context

chr5: 18616293-18616456 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR1510a

Mature mtr-miR1510a-5p

• Accession: MIMAT0010032
• Description: Medicago truncatula mtr-miR1510a-5p mature miRNA
• Sequence: 20 - UUGUCUUACCCAUUCCUCCCA - 40
• Evidence: experimental ; Illumina [1], Northern [1]

Mature mtr-miR1510a-3p

• Accession: MIMAT0010033
• Description: Medicago truncatula mtr-miR1510a-3p mature miRNA
• Sequence: 128 - CGGAGGAUUAGGUAAAACAAC - 148
• Evidence: experimental ; Illumina [1], Northern [1], 454 [2]

References

1. PubMed ID: 19068109
   High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
   Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T
   BMC Genomics (2008) 9:593


2. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796