Stem-loop sequence bta-mir-212

Accession

MI0009776 (change log)

Description

Bos taurus miR-212 stem-loop

Gene family

MIPF0000065; mir-132

Literature search

10 open access papers mention bta-mir-212
(73 sentences)

Stem-loop

   cggagccacccugcccgggcagc   c   -ca  u     cu      c      ccc     
5'                        gcg cgg   cc uggcu  agacug uuacug   gggc 
                          ||| |||   || |||||  |||||| ||||||   ||| c
3'                        cgc gcc   gg acuga  ucugac aaugac   cccg 
   ------------ccgccccgguc   a   acc  c     cc      -      --u     

Deep sequencing

1199 reads, 0 reads per million, 65 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr19: 23783918-23784028 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-212

• bta-mir-212: chr19: 23783918-23784028 [-]
• bta-mir-132: chr19: 23783488-23783588 [-]

Database links

• EntrezGene:MIR212
• RNAcentral:URS000075E6BA_9913
• miRBase Tracker:MI0009776

Mature sequence bta-miR-212

• Accession: MIMAT0009264
• Sequence: 32 - accuuggcucuagacugcuuacu - 54
• Deep sequencing: 286 reads, 56 experiments
• Evidence: by similarity; MI0000288
• Predicted targets:
  • TargetScanVert:bta-miR-212

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).