miRBase entry: bta-mir-152

Stem-loop bta-mir-152


Accession
MI0009748
Description
Bos taurus bta-mir-152 precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
18 open access papers mention bta-mir-152
(198 sentences)

Sequence

36447 reads, 219 reads per million, 70 experiments
uguccucccggcccagguucugugauacacuccgacucgggcucuggagcagUCAGUGCAUGACAGAACUUGGGcccggacggacc
.(((((((.((((((((((((((.((.((((..((((...(((....))))))))))).)).)))))))))))))).))).)))).

Structure
u    -   c              g  a    cc    cgg   c 
 gucc ucc ggcccagguucugu au cacu  gacu   gcu u
 |||| ||| |||||||||||||| || ||||  ||||   |||  
 cagg agg ccGGGUUCAAGACA UA GUGA  CUga   cga g
c    c   c              G  C    --    ---   g 


Annotation confidence High
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Genome context
chr19: 39247030-39247115 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-152
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-152

Accession MIMAT0009238
Description Bos taurus bta-miR-152 mature miRNA
Sequence 53 - UCAGUGCAUGACAGAACUUGGG - 74
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125