Stem-loop osa-MIR1863a

Accession

MI0008264

Description

Oryza sativa osa-MIR1863a precursor miRNA

Literature search

4 open access papers mention osa-MIR1863a
(10 sentences)

Sequence

435 reads, 310 reads per million, 2 experiments

ccauaucucuagucuaauaugguauccgagcuuauugguuaguugcucuuguucccucaaucccguuugucuccauccacaaccacacgagugcaaagccucacauucaugucaacaacaacucucaugucauuagcaaaucuagugucuagcaucaacaccuagguagcacuuauugguuaaaaagggcauuugcuaggaaaaaugagcaaccacuaguccacuacacguuuggaugcuugacaauaugugcgcuuuggugcuugcaauaauaauguugugauggaagguuugucacuaaauauugguuagcaaaguugcaguauggggaagaccaauaAGCUCUGAUACCAUGUUAGAUUAGugauaugccu
.((((((.((((((((((((((((((.(((((((((((((........(((......))).(((((((((.((((((.(((((....((((((((((((..(((((...((((.......((......))((((((.....))))))(((((((......(((...((((........))))...))).....)))))))......(((((.(((...((.......))...))).)))))))))..))))).))))).)))))))..........)))))))))))((.(((((.(((((...)))))..))))).)))))).)))))...))))))))))))).)))))))))))))))))).))))))...

Structure

--c      u                  c             aguugcucuuguucccucaau     -    -------------------------------c      c     ------caca       -     cu     uca    -------aacaacaacucucaugucauuagcaaaucuagug       ucaaca   agg    acu 
   cauauc cuagucuaauaugguauc gagcuuauugguu                     cccgu uugu                                uccauc acaac          cgagugc aaagc  cacau   uguc                                         ucuagca      ccu   uagc   u
   |||||| |||||||||||||||||| |||||||||||||                     ||||| ||||                                |||||| |||||          ||||||| |||||  |||||   ||||                                         |||||||      |||   ||||    
   guauag GAUUAGAUUGUACCAUAG CUCGAauaaccag                     gggua gacg                                agguag uguug          guucgug uuucg  gugua   acag                                         ggaucgu      gga   auug   a
ucc      u                  U             ------------------aag     u    uugaaacgauugguuauaaaucacuguuugga      -     uaauaauaac       g     -c     -ua    uucguagguuugcacaucaccugaucaccaacgaguaaaaa       -uuacg   aaa    guu 

Annotation confidence Not enough data

Genome context

Chr2: 8521746-8522119 [+]

Mature osa-miR1863a

• Accession: MIMAT0007813
• Description: Oryza sativa osa-miR1863a mature miRNA
• Sequence: 341 - AGCUCUGAUACCAUGUUAGAUUAG - 364
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465