Stem-loop sequence osa-MIR1863a

Accession

MI0008264 (change log)

Previous IDs

osa-MIR1863

Description

Oryza sativa miR1863 stem-loop

Literature search

4 open access papers mention osa-MIR1863a
(10 sentences)

Stem-loop

   --c      u                  c             aguugcucuuguucccucaaucccguuugucuccauccacaaccacacgagugcaaagccucacauucaugucaacaacaacucucaugucauuagcaaaucuagugucuagcaucaacaccuagguagcacuuauugguuaaaa 
5'    cauauc cuagucuaauaugguauc gagcuuauugguu                                                                                                                                                 a
      |||||| |||||||||||||||||| |||||||||||||                                                                                                                                                  
3'    guauag gauuagauuguaccauag cucgaauaaccag                                                                                                                                                 g
   ucc      u                  u             aagggguaugacguugaaacgauugguuauaaaucacuguuuggaagguaguguuguaauaauaacguucgugguuucgcguguauaacaguucguagguuugcacaucaccugaucaccaacgaguaaaaaggaucguuuacgg 

Deep sequencing

464 reads, 250 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr2: 8521746-8522119 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008264

Mature sequence osa-miR1863a

• Accession: MIMAT0007813
• Previous IDs: osa-miR1863
• Sequence: 341 - agcucugauaccauguuagauuag - 364
• Deep sequencing: 455 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000042D789_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).