Stem-loop osa-MIR1858b

Accession

MI0008241

Description

Oryza sativa osa-MIR1858b precursor miRNA

Gene family

MIPF0000650; MIR1858

Literature search

1 open access papers mention osa-MIR1858b
(1 sentences)

Sequence

1 reads, 0 reads per million, 1 experiments

ucccgucaucgcugccggcaaaggggggggugccgcaacaagGAGAGGAGGACGGAGUGGGGCaaguggagcgucaaaggggaugucaucgcugccgaaucugcuagugggacauccccuucgaugcuccacucgccccaauauguccuccucuccuuguugcggcaccccccuucgcuggcagcgacgauggc
..(((((.(((((((((((...((((((((((((((((((((((((((((((((...((((((.(((((((((((.(((((((((((.(((((((.......)).)))))))))))))))).))))))))))).))))))...)))))))))))))))))))))))))))))))).))))))))))).))))).

Structure

uc     a           aaa                                GAG      a           a           a     -  cg 
  ccguc ucgcugccggc   ggggggggugccgcaacaagGAGAGGAGGACG   UGGGGC aguggagcguc aaggggauguc ucgcu gc  a
  ||||| |||||||||||   ||||||||||||||||||||||||||||||||   |||||| ||||||||||| ||||||||||| ||||| ||  a
  gguag agcgacggucg   uuccccccacggcguuguuccucuccuccugu   accccg ucaccucguag uuccccuacag gguga cg  u
-c     c           --c                                aua      c           c           -     u  uc 

Annotation confidence Not enough data

Genome context

Chr9: 13194040-13194233 [+]

Mature osa-miR1858b

• Accession: MIMAT0007787
• Description: Oryza sativa osa-miR1858b mature miRNA
• Sequence: 43 - GAGAGGAGGACGGAGUGGGGC - 63
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465