Stem-loop cel-mir-1828

Accession

MI0008196

Description

Caenorhabditis elegans cel-mir-1828 precursor miRNA

Sequence

21 reads, 1 reads per million, 3 experiments

gaucacuuuuaucgguuccggucccucugcaaaaaaguggACUGGAAGCAUUUAAGUGAUAGU
.(((((((..((.(.(((((((((..((.......)).))))))))).)))..)))))))...

Structure

--g       uu  c g         cu  gc 
   aucacuu  au g uuccggucc  cu  a
   |||||||  || | |||||||||  ||  a
   UAGUGAA  UA C AAGGUCAgg  ga  a
UGA       UU  - G         -u  aa 

Annotation confidence Not enough data

Genome context

chrI: 10600463-10600525 [+]

Mature cel-miR-1828

• Accession: MIMAT0006768
• Description: Caenorhabditis elegans cel-miR-1828 mature miRNA
• Sequence: 41 - ACUGGAAGCAUUUAAGUGAUAGU - 63
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415