Stem-loop sequence gga-mir-454

AccessionMI0006984 (change log)
DescriptionGallus gallus miR-454 stem-loop
Gene family MIPF0000174; mir-454
Literature search

4 open access papers mention gga-mir-454
(9 sentences)

   ccauuau   -gcuuccuaa       -  u          ---         -  -       ug 
5'        cca          ccuuaag ga gagacccuau   caauauugc cu cugcuuu  u
          |||          ||||||| || ||||||||||   ||||||||| || |||||||  g
3'        ggu          ggaguuu cu uucugggaua   guuauaacg ga gauggga  c
   -------   acuucuuaug       u  u          uuc         u  u       cu 
Get sequence
Deep sequencing
5001 reads, 0 reads per million, 5 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr15: 400264-400384 [-]
Clustered miRNAs
< 10kb from gga-mir-454
gga-mir-130achr15: 407968-408050 [-]
gga-mir-301achr15: 406743-406835 [-]
gga-mir-454chr15: 400264-400384 [-]
gga-mir-130bchr15: 399151-399227 [-]
Database links

Mature sequence gga-miR-454-5p

Accession MIMAT0007291
Previous IDsgga-miR-454*

14 - 


 - 32

Get sequence
Deep sequencing10 reads, 4 experiments
Evidence experimental; cloned [1]
Predicted targets

Mature sequence gga-miR-454-3p

Accession MIMAT0007292
Previous IDsgga-miR-454

72 - 


 - 94

Get sequence
Deep sequencing4982 reads, 5 experiments
Evidence experimental; cloned [1-2], Illumina [3]
Database links
Predicted targets


PMID:18463306 "Conservation of small RNA pathways in platypus" Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ Genome Res. 18:995-1004(2008).
PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).