Stem-loop sequence hsa-mir-1197

Accession

MI0006656 (change log)

Symbol

HGNC:MIR1197

Description

Homo sapiens miR-1197 stem-loop

Gene family

MIPF0000126; mir-379

Literature search

4 open access papers mention hsa-mir-1197
(4 sentences)

Stem-loop

   acuuccu      -u     ugc   u       gug g    - uuu 
5'        gguauu  gaaga   ggu gaccaug   u uacg c   a
          ||||||  |||||   ||| |||||||   | |||| |   u
3'        cuauaa  cuucu   uca cugguac   g augc g   u
   ------a      cu     ---   u       aca g    a ugu 

Deep sequencing

260 reads, 0 reads per million, 72 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

Afanasyeva et al. refer to this sequence using the internal identifier MYCNSC_NB5_330 [1]. Some additional sequences reported in [1] do not meet miRBase requirements for miRNA identification.

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr14: 101025564-101025651 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000414334 ; BEGAIN-007; intron 1

  OTTHUMT00000414329 ; BEGAIN-001; intron 2

  OTTHUMT00000414331 ; BEGAIN-005; intron 2

  OTTHUMT00000414332 ; BEGAIN-003; intron 2

  OTTHUMT00000414335 ; BEGAIN-006; intron 2

  OTTHUMT00000414337 ; BEGAIN-004; intron 2

  ENST00000557378 ; BEGAIN-007; intron 1

  ENST00000443071 ; BEGAIN-201; intron 1

  ENST00000355173 ; BEGAIN-001; intron 2

  ENST00000553553 ; BEGAIN-005; intron 2

  ENST00000556188 ; BEGAIN-003; intron 2

  ENST00000554140 ; BEGAIN-006; intron 2

  ENST00000554747 ; BEGAIN-004; intron 2

Clustered miRNAs

< 10kb from hsa-mir-1197

• hsa-mir-379: chr14: 101022066-101022132 [+]
• hsa-mir-411: chr14: 101023325-101023420 [+]
• hsa-mir-299: chr14: 101023794-101023856 [+]
• hsa-mir-380: chr14: 101025017-101025077 [+]
• hsa-mir-1197: chr14: 101025564-101025651 [+]
• hsa-mir-323a: chr14: 101025732-101025817 [+]
• hsa-mir-758: chr14: 101026020-101026107 [+]
• hsa-mir-329-1: chr14: 101026785-101026864 [+]
• hsa-mir-329-2: chr14: 101027100-101027183 [+]
• hsa-mir-494: chr14: 101029634-101029714 [+]
• hsa-mir-1193: chr14: 101030052-101030129 [+]
• hsa-mir-543: chr14: 101031987-101032064 [+]
• hsa-mir-495: chr14: 101033755-101033836 [+]

Database links

• EntrezGene:MIR1197
• HGNC:MIR1197
• RNAcentral:URS000075B597_9606
• miRBase Tracker:MI0006656

Mature sequence hsa-miR-1197

• Accession: MIMAT0005955
• Sequence: 57 - uaggacacauggucuacuucu - 77
• Deep sequencing: 252 reads, 71 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00003E5E03_9606
• Predicted targets:
  • TargetMiner:hsa-miR-1197
  • TargetScanVert:hsa-miR-1197
  • miRDB:hsa-miR-1197
  • microrna.org:hsa-miR-1197

References

1. PMID:18230126 "New miRNAs cloned from neuroblastoma" Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F BMC Genomics. 9:52(2008).