Stem-loop sequence hsa-mir-548j

Accession

MI0006345 (change log)

Symbol

HGNC:MIR548J

Description

Homo sapiens miR-548j stem-loop

Gene family

MIPF0000317; mir-548

Literature search

45 open access papers mention hsa-mir-548j
(157 sentences)

Stem-loop

   --    agc     -aa    ua                 u     c    g    ac 
5'   gggc   cagug   uagu  gcuggugcaaaaguaau gcggu uuug uauu  u
     ||||   |||||   ||||  ||||||||||||||||| ||||| |||| ||||   
3'   cuug   gucgc   auca  cgaccacguuuucauua cguca aaac guga  u
   ga    --a     aag    uc                 -     a    g    cu 

Deep sequencing

4452 reads, 1.41 reads per million, 142 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr22: 26555212-26555323 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR548J
• EntrezGene:MIR548J
• HGNC:MIR548J
• RNAcentral:URS000075C407_9606
• miRBase Tracker:MI0006345

Mature sequence hsa-miR-548j-5p

• Accession: MIMAT0005875
• Sequence: 29 - aaaaguaauugcggucuuuggu - 50
• Deep sequencing: 4289 reads, 141 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000008AA34_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-548j-5p
  • miRDB:hsa-miR-548j-5p
  • microrna.org:hsa-miR-548j-5p

Mature sequence hsa-miR-548j-3p

• Accession: MIMAT0026737
• Sequence: 65 - caaaaacugcauuacuuuugc - 85
• Deep sequencing: 107 reads, 36 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000759BFD_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-548j-3p
  • miRDB:hsa-miR-548j-3p

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).
2. PMID:23226537 "The repertoire and features of human platelet microRNAs" Ple H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P PLoS One. 7:e50746(2012).