Stem-loop sequence hsa-mir-1238

Accession

MI0006328 (change log)

Symbol

HGNC:MIR1238

Description

Homo sapiens miR-1238 stem-loop

Gene family

MIPF0000941; mir-1238

Literature search

12 open access papers mention hsa-mir-1238
(111 sentences)

Stem-loop

   gugag    a  -cc   -  ugu  uug    -  -u   -    g 
5'      uggg gc   cag ug   gg   gggc ca  ggc gggu g
        |||| ||   ||| ||   ||   |||| ||  ||| |||| g
3'      accc cg   guc gc   cc   uccg gu  ccg cccg c
   ----g    -  ucu   u  --u  --u    a  cu   a    a 

Deep sequencing

13 reads, 0 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 10552122-10552204 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000451244 ; PDE4A-001; intron 1

  OTTHUMT00000451245 ; PDE4A-002; intron 1

  OTTHUMT00000451246 ; PDE4A-003; intron 1

  OTTHUMT00000451243 ; PDE4A-005; intron 3

  ENST00000352831 ; PDE4A-001; intron 1

  ENST00000293683 ; PDE4A-002; intron 1

  ENST00000440014 ; PDE4A-003; intron 1

  ENST00000380702 ; PDE4A-201; intron 2

  ENST00000592685 ; PDE4A-005; intron 3

Database links

• EntrezGene:MIR1238
• HGNC:MIR1238
• miRBase Tracker:MI0006328

Mature sequence hsa-miR-1238-5p

• Accession: MIMAT0022947
• Sequence: 1 - gugagugggagccccagugugug - 23
• Deep sequencing: 1 reads, 1 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:hsa-miR-1238-5p
  • miRDB:hsa-miR-1238-5p

Mature sequence hsa-miR-1238-3p

• Accession: MIMAT0005593
• Previous IDs: hsa-miR-1238
• Sequence: 62 - cuuccucgucugucugcccc - 81
• Deep sequencing: 2 reads, 2 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-1238-3p
  • miRDB:hsa-miR-1238-3p
  • microrna.org:hsa-miR-1238-3p

References

1. PMID:17964270 "Mammalian mirtron genes" Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC Mol Cell. 28:328-336(2007).