Stem-loop sequence hsa-mir-1229

Accession

MI0006319 (change log)

Symbol

HGNC:MIR1229

Description

Homo sapiens miR-1229 stem-loop

Literature search

9 open access papers mention hsa-mir-1229
(84 sentences)

Stem-loop

   --     u     -u   gg     c   -gg   g 
5'   guggg agggu  ugg  gagag gug   cug g
     ||||| |||||  |||  ||||| |||   ||| g
3'   caccc ucccg  acc  cucuc cac   gac u
   ga     -     uc   -a     c   agg   u 

Deep sequencing

215 reads, 3.39 reads per million, 59 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr5: 179798278-179798346 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR1229
• HGNC:MIR1229
• miRBase Tracker:MI0006319

Mature sequence hsa-miR-1229-5p

• Accession: MIMAT0022942
• Sequence: 1 - guggguaggguuugggggagagcg - 24
• Deep sequencing: 10 reads, 7 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:hsa-miR-1229-5p
  • miRDB:hsa-miR-1229-5p

Mature sequence hsa-miR-1229-3p

• Accession: MIMAT0005584
• Previous IDs: hsa-miR-1229
• Sequence: 47 - cucucaccacugcccucccacag - 69
• Deep sequencing: 176 reads, 41 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-1229-3p
  • miRDB:hsa-miR-1229-3p
  • microrna.org:hsa-miR-1229-3p

References

1. PMID:17964270 "Mammalian mirtron genes" Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC Mol Cell. 28:328-336(2007).