Stem-loop sequence hsa-mir-1227

Accession

MI0006316 (change log)

Symbol

HGNC:MIR1227

Description

Homo sapiens miR-1227 stem-loop

Gene family

MIPF0000454; mir-1227

Literature search

11 open access papers mention hsa-mir-1227
(44 sentences)

Stem-loop

   guggggccaggcgguggugggcacugcug      g   agcagccaugcaga 
5'                              gggugg cac              g
                                |||||| |||               
3'                              cccacc gug              c
   -------------------gaccccuuuu      -   ccccaguuuacggg 

Deep sequencing

135 reads, 0 reads per million, 40 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 2234062-2234149 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000473232 ; PLEKHJ1-006; intron 1

  OTTHUMT00000451260 ; PLEKHJ1-007; intron 2

  OTTHUMT00000451254 ; PLEKHJ1-003; intron 2

  OTTHUMT00000451261 ; PLEKHJ1-008; intron 3

  OTTHUMT00000451262 ; PLEKHJ1-005; intron 3

  OTTHUMT00000451263 ; PLEKHJ1-012; intron 3

  OTTHUMT00000451252 ; PLEKHJ1-009; intron 4

  OTTHUMT00000451259 ; PLEKHJ1-011; intron 4

  OTTHUMT00000451256 ; PLEKHJ1-002; intron 4

  OTTHUMT00000451255 ; PLEKHJ1-001; intron 5

  ENST00000588545 ; PLEKHJ1-006; intron 1

  ENST00000408484 ; MIR1227-201; exon 1

  ENST00000586608 ; PLEKHJ1-007; intron 2

  ENST00000588450 ; PLEKHJ1-003; intron 2

  ENST00000591099 ; PLEKHJ1-008; intron 3

  ENST00000585423 ; PLEKHJ1-005; intron 3

  ENST00000586497 ; PLEKHJ1-012; intron 3

  ENST00000587394 ; PLEKHJ1-009; intron 4

  ENST00000587962 ; PLEKHJ1-011; intron 4

  ENST00000589791 ; PLEKHJ1-002; intron 4

  ENST00000326631 ; PLEKHJ1-201; intron 4

  ENST00000589097 ; PLEKHJ1-001; intron 5

Clustered miRNAs

< 10kb from hsa-mir-1227

• hsa-mir-6789: chr19: 2235829-2235926 [-]
• hsa-mir-1227: chr19: 2234062-2234149 [-]

Database links

• EntrezGene:MIR1227
• HGNC:MIR1227
• RNAcentral:URS00006DE17B_9606
• miRBase Tracker:MI0006316

Mature sequence hsa-miR-1227-5p

• Accession: MIMAT0022941
• Sequence: 1 - guggggccaggcggugg - 17
• Deep sequencing: 4 reads, 4 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:hsa-miR-1227-5p
  • miRDB:hsa-miR-1227-5p

Mature sequence hsa-miR-1227-3p

• Accession: MIMAT0005580
• Previous IDs: hsa-miR-1227
• Sequence: 69 - cgugccacccuuuuccccag - 88
• Deep sequencing: 123 reads, 32 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075CFA8_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-1227-3p
  • miRDB:hsa-miR-1227-3p
  • microrna.org:hsa-miR-1227-3p

References

1. PMID:17964270 "Mammalian mirtron genes" Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC Mol Cell. 28:328-336(2007).