Stem-loop sequence hsa-mir-892b

Accession

MI0005538 (change log)

Symbol

HGNC:MIR892B

Description

Homo sapiens miR-892b stem-loop

Gene family

MIPF0000386; mir-743

Literature search

11 open access papers mention hsa-mir-892b
(43 sentences)

Stem-loop

   --u  aa   c             u    uuuau  a   u 
5'    gc  ugc cuacucagaaagg gcca     gu gau u
      ||  ||| ||||||||||||| ||||     || ||| u
3'    cg  acg gaugggucuuucc cggu     ca cug a
   acu  ga   a             u    -----  -   u 

Deep sequencing

74 reads, 0 reads per million, 36 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 145997198-145997274 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-892b

• hsa-mir-891b: chrX: 146001053-146001131 [-]
• hsa-mir-892b: chrX: 145997198-145997274 [-]
• hsa-mir-892a: chrX: 145996669-145996743 [-]
• hsa-mir-888: chrX: 145994784-145994860 [-]
• hsa-mir-890: chrX: 145994275-145994351 [-]
• hsa-mir-892c: chrX: 145992750-145992826 [-]

Database links

• EntrezGene:MIR892B
• HGNC:MIR892B
• miRBase Tracker:MI0005538

Mature sequence hsa-miR-892b

• Accession: MIMAT0004918
• Sequence: 46 - cacuggcuccuuucuggguaga - 67
• Deep sequencing: 47 reads, 26 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetMiner:hsa-miR-892b
  • TargetScanVert:hsa-miR-892b
  • miRDB:hsa-miR-892b
  • microrna.org:hsa-miR-892b

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).