Stem-loop sequence hsa-mir-450b

Accession

MI0005531 (change log)

Symbol

HGNC:MIR450B

Description

Homo sapiens miR-450b stem-loop

Gene family

MIPF0000128; mir-450

Literature search

24 open access papers mention hsa-mir-450b
(40 sentences)

Stem-loop

   --          uuu     u   u    g    ug aa 
5'   gcagaauuau   ugcaa aug uccu aaua  u  u
     ||||||||||   ||||| ||| |||| ||||  |  a
3'   uguuuugaua   acguu uac aggg uuau  g  u
   ua          ccu     u   u    -    gu aa 

Deep sequencing

13768 reads, 27.2 reads per million, 151 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 134540185-134540262 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-450b

• hsa-mir-424: chrX: 134546614-134546711 [-]
• hsa-mir-503: chrX: 134546328-134546398 [-]
• hsa-mir-542: chrX: 134541341-134541437 [-]
• hsa-mir-450a-2: chrX: 134540508-134540607 [-]
• hsa-mir-450a-1: chrX: 134540341-134540431 [-]
• hsa-mir-450b: chrX: 134540185-134540262 [-]

Database links

• EntrezGene:MIR450B
• HGNC:MIR450B
• RNAcentral:URS000075C453_9606
• miRBase Tracker:MI0005531

Mature sequence hsa-miR-450b-5p

• Accession: MIMAT0004909
• Sequence: 11 - uuuugcaauauguuccugaaua - 32
• Deep sequencing: 12949 reads, 149 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000422A99_9606
• Predicted targets:
  • TargetMiner:hsa-miR-450b-5p
  • TargetScanVert:hsa-miR-450b-5p
  • miRDB:hsa-miR-450b-5p
  • microrna.org:hsa-miR-450b-5p

Mature sequence hsa-miR-450b-3p

• Accession: MIMAT0004910
• Sequence: 48 - uugggaucauuuugcauccaua - 69
• Deep sequencing: 818 reads, 66 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00002FF522_9606
• Predicted targets:
  • TargetMiner:hsa-miR-450b-3p
  • TargetScanVert:hsa-miR-450b-3p
  • miRDB:hsa-miR-450b-3p
  • microrna.org:hsa-miR-450b-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).