Stem-loop sequence cel-mir-785

Accession

MI0005185 (change log)

Description

Caenorhabditis elegans miR-785 stem-loop

Gene family

MIPF0000896; mir-785

Stem-loop

       uu    u    c   a         uu      a   gaaacc 
5' gcuc  uuuc cacc auc gcacagaau  uucgcu aca      u
   ||||  |||| |||| ||| |||||||||  |||||| |||      c
3' cgag  aaag gugg uag uguguuuug  aaguga ugu      a
       -u    -    -   a         uu      a   aacaaa 

Deep sequencing

11176 reads, 0 reads per million, 16 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrX: 3004668-3004761 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cel-mir-785

• cel-mir-359: chrX: 3004291-3004400 [+]
• cel-mir-785: chrX: 3004668-3004761 [+]
• cel-mir-249: chrX: 3006440-3006536 [-]

Database links

• RNAcentral:URS0000579866_6239
• miRBase Tracker:MI0005185

Mature sequence cel-miR-785-5p

• Accession: MIMAT0032015
• Sequence: 20 - agcacagaauuuuucgcuaaca - 41
• Deep sequencing: 4 reads, 3 experiments
• Evidence: experimental; 454 [1]

Mature sequence cel-miR-785-3p

• Accession: MIMAT0004220
• Previous IDs: cel-miR-785
• Sequence: 59 - uaagugaauuguuuuguguaga - 80
• Deep sequencing: 11164 reads, 16 experiments
• Evidence: experimental; 454 [1], Illumina [2], CLIPseq [3]
• Database links:
  • RNAcentral:URS000044A766_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-785
  • microrna.org:cel-miR-785-3p

References

1. PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
3. PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).