Stem-loop sequence dre-mir-499

Accession

MI0004766 (change log)

Description

Danio rerio miR-499 stem-loop

Gene family

MIPF0000173; mir-499

Literature search

15 open access papers mention dre-mir-499
(154 sentences)

Stem-loop

      g   --     g    ua       c           -ga  a 
5' acu aga  gggag cagu  agacuug agugauguuua   ga a
   ||| |||  ||||| ||||  ||||||| |||||||||||   ||  
3' uga ucu  uccuc gucg  ucugaau ucacuacaagu   cu u
      g   ug     g    ug       u           aca  g 

Deep sequencing

4128 reads, 143 reads per million, 7 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr11: 25205153-25205243 [-]
• Overlapping transcripts:

  sense

  OTTDART00000057671 ; myh7ba-001; intron 18

  ENSDART00000152186 ; myh7ba-001; intron 18

  ENSDART00000097316 ; myh7ba-201; intron 18

Database links

• EntrezGene:mir499
• EntrezGene:mir499
• RNAcentral:URS000075B8C4_7955
• miRBase Tracker:MI0004766

Mature sequence dre-miR-499-5p

• Accession: MIMAT0003749
• Previous IDs: dre-miR-499
• Sequence: 17 - uuaagacuugcagugauguuua - 38
• Deep sequencing: 4087 reads, 7 experiments
• Evidence: experimental; cloned [1], in-situ [1], Northern [1]
• Database links:
  • RNAcentral:URS000017B171_7955
• Predicted targets:
  • TargetScanFish:dre-miR-499

Mature sequence dre-miR-499-3p

• Accession: MIMAT0032009
• Sequence: 54 - aacaucacuuuaagucugugcu - 75
• Deep sequencing: 41 reads, 2 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000075D6CE_7955

References

1. PMID:16698962 "Cloning and expression of new microRNAs from zebrafish" Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH Nucleic Acids Res. 34:2558-2569(2006).