miRBase entry: hsa-mir-320b-2

Stem-loop hsa-mir-320b-2


Accession
MI0003839
Symbol
HGNC: MIR320B2
Description
Homo sapiens hsa-mir-320b-2 precursor miRNA
Gene family
MIPF0000163; mir-320

Literature search
146 open access papers mention hsa-mir-320b-2
(530 sentences)

Sequence

1043772 reads, 3661 reads per million, 137 experiments
gucucuuaggcuuucucuucccagauuucccaaaguugggAAAAGCUGGGUUGAGAGGGCAAaaggaaaaa
.((.(((..((((((((..(((((.(((((((....)))))))..)))))..))))))))..)))))....

Structure
---g  u   ag        uu     -a       a 
    uc cuu  gcuuucuc  cccag  uuuccca a
    || |||  ||||||||  |||||  |||||||  
    ag gaa  CGGGAGAG  GGGUC  AAAgggu g
aaaa  -   AA        UU     GA       u 


Annotation confidence Not enough data
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Comments
This sequence was identified as a candidate by RAKE analysis [1], and later confirmed by Solexa sequencing [2,3]. The sequence was named mir-1242 in [2].

Genome context
chr1: 224257040-224257110 [-]

Database links

Mature hsa-miR-320b

Accession MIMAT0005792
Description Homo sapiens hsa-miR-320b mature miRNA
Sequence 41 - AAAAGCUGGGUUGAGAGGGCAA - 62
Evidence experimental
RAKE [1], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 16954537
    Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
    "Genome Res (2006) 16:1289-1298

  2. PubMed ID: 18285502
    Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    "Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA"
    "Genome Res (2008) 18:610-621

  3. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415