Stem-loop sequence hsa-mir-769

Accession

MI0003834 (change log)

Symbol

HGNC:MIR769

Description

Homo sapiens miR-769 stem-loop

Gene family

MIPF0000727; mir-769

Literature search

18 open access papers mention hsa-mir-769
(48 sentences)

Stem-loop

   gc     u   --  uu   g        c ug       u   u   g    g   ugu 
5'   cuugg gcu  ga  ccu ggcucuga c  agaccuc ggg ucu agcu uga   u
     ||||| |||  ||  ||| |||||||| |  ||||||| ||| ||| |||| |||    
3'   gaacc ugg  cu  ggg ccgggacu g  ucugggg cuc agg ucga gcu   g
   -c     u   gu  cc   g        u gu       c   u   g    -   cuc 

Deep sequencing

71591 reads, 121 reads per million, 153 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 46018932-46019049 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000459589 ; VASP-001; intron 1

  OTTHUMT00000459590 ; VASP-012; intron 1

  OTTHUMT00000459591 ; VASP-004; intron 1

  OTTHUMT00000459593 ; VASP-003; intron 1

  OTTHUMT00000459594 ; VASP-010; intron 1

  OTTHUMT00000459588 ; VASP-011; intron 2

  ENST00000245932 ; VASP-001; intron 1

  ENST00000592139 ; VASP-012; intron 1

  ENST00000590603 ; VASP-004; intron 1

  ENST00000586014 ; VASP-003; intron 1

  ENST00000586619 ; VASP-010; intron 1

  ENST00000589627 ; VASP-011; intron 2

Database links

• EntrezGene:MIR769
• HGNC:MIR769
• RNAcentral:URS000075D819_9606
• miRBase Tracker:MI0003834

Mature sequence hsa-miR-769-5p

• Accession: MIMAT0003886
• Sequence: 30 - ugagaccucuggguucugagcu - 51
• Deep sequencing: 68049 reads, 152 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00004E008F_9606
• Predicted targets:
  • TargetMiner:hsa-miR-769-5p
  • TargetScanVert:hsa-miR-769-5p
  • miRDB:hsa-miR-769-5p
  • microrna.org:hsa-miR-769-5p

Mature sequence hsa-miR-769-3p

• Accession: MIMAT0003887
• Sequence: 69 - cugggaucuccggggucuugguu - 91
• Deep sequencing: 3307 reads, 129 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00005F5472_9606
• Predicted targets:
  • TargetMiner:hsa-miR-769-3p
  • TargetScanVert:hsa-miR-769-3p
  • miRDB:hsa-miR-769-3p
  • microrna.org:hsa-miR-769-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).