Stem-loop sequence gga-mir-146b

Accession

MI0003695 (change log)

Description

Gallus gallus miR-146b stem-loop

Gene family

MIPF0000103; mir-146

Literature search

14 open access papers mention gga-mir-146b
(55 sentences)

Stem-loop

   ----   ------cug      ug   uug          u       -    aaagc 
5'     gga         gcugcu  gcu   agaacugaau ccauagg cguu     a
       |||         ||||||  |||   |||||||||| ||||||| ||||      
3'     ccu         cgacgg  uga   ucuugacuua gguaucc guaa     u
   ccga   ccaaauaaa      gu   -cg          -       c    aaacc 

Deep sequencing

344689 reads, 5.48e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr6: 23143386-23143490 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR146B
• RNAcentral:URS000075E3D2_9031
• miRBase Tracker:MI0003695

Mature sequence gga-miR-146b-5p

• Accession: MIMAT0003351
• Previous IDs: gga-miR-146b
• Sequence: 19 - ugagaacugaauuccauaggcg - 40
• Deep sequencing: 343705 reads, 5 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS000075E483_9031
• Predicted targets:
  • TargetScanVert:gga-miR-146b-5p
  • miRDB:gga-miR-146b-5p

Mature sequence gga-miR-146b-3p

• Accession: MIMAT0003724
• Previous IDs: gga-miR-146b*
• Sequence: 59 - cccuauggauucaguucugc - 78
• Deep sequencing: 983 reads, 5 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:gga-miR-146b-3p
  • miRDB:gga-miR-146b-3p

References

1. PMID:16750530 "Identification of microRNAs from different tissues of chicken embryo and adult chicken" Xu H, Wang X, Du Z, Li N FEBS Lett. 580:3610-3616(2006).
2. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).