Stem-loop sequence hsa-mir-647

AccessionMI0003662 (change log)
Symbol HGNC:MIR647
DescriptionHomo sapiens miR-647 stem-loop
Gene family MIPF0000939; mir-647
Literature search

8 open access papers mention hsa-mir-647
(24 sentences)

Stem-loop 
   ---   aag g ug    g  g   c  u a        a     aggaa  c 
5'    agg   u u  gccu ug cug ac c cuuccuuc gcccc     gc u
      |||   | |  |||| || ||| || | |||||||| |||||     ||  
3'    ucc   g g  cggg ac gac ug g gagggagg cgggg     ug u
   cag   --g g gu    -  g   -  - -        a     ---gc  g
Get sequence
Deep sequencing
72 reads, 42.1 reads per million, 38 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr20: 63942631-63942726 [-]
intergenic
Clustered miRNAs
< 10kb from hsa-mir-647
hsa-mir-647chr20: 63942631-63942726 [-]
hsa-mir-1914chr20: 63941465-63941544 [-]
Database links

Mature sequence hsa-miR-647

Accession MIMAT0003317
Sequence

16 -  

guggcugcacucacuuccuuc

 - 36

Get sequence
Deep sequencing6 reads, 6 experiments
Evidence experimental; Microarray [1], SAGE [1]
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).