Stem-loop sequence hsa-mir-639

Accession

MI0003654 (change log)

Symbol

HGNC:MIR639

Description

Homo sapiens miR-639 stem-loop

Gene family

MIPF0000549; mir-639

Literature search

1 open access papers mention hsa-mir-639
(3 sentences)

Stem-loop

   ------u   - gac g     g       ugga g    --    -      ag 
5'        ggc c   g ggcgc cgcggcc    g ggcg  gggc ggacgc  a
          ||| |   | ||||| |||||||    | ||||  |||| ||||||   
3'        ccg g   u ucgcg gcguugg    c ucgc  ucug uuugcg  g
   gucgugu   a gga g     a       ---- g    ua    a      cc 

Deep sequencing

1233 reads, 78.6 reads per million, 112 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 14529543-14529640 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000459900 ; DDX39A-020; intron 1

  OTTHUMT00000459878 ; DDX39A-003; intron 1

  OTTHUMT00000459880 ; DDX39A-001; intron 1

  OTTHUMT00000459883 ; DDX39A-017; intron 1

  OTTHUMT00000459884 ; DDX39A-012; intron 1

  OTTHUMT00000459888 ; DDX39A-006; intron 1

  OTTHUMT00000459889 ; DDX39A-002; intron 1

  OTTHUMT00000459890 ; DDX39A-007; intron 1

  OTTHUMT00000459891 ; DDX39A-010; intron 1

  OTTHUMT00000459892 ; DDX39A-013; intron 1

  OTTHUMT00000459893 ; DDX39A-011; intron 1

  OTTHUMT00000459894 ; DDX39A-008; intron 1

  OTTHUMT00000459895 ; DDX39A-009; intron 1

  ENST00000324340 ; DDX39A-020; intron 1

  ENST00000589318 ; DDX39A-003; intron 1

  ENST00000242776 ; DDX39A-001; intron 1

  ENST00000588542 ; DDX39A-017; intron 1

  ENST00000589675 ; DDX39A-012; intron 1

  ENST00000590260 ; DDX39A-006; intron 1

  ENST00000586558 ; DDX39A-002; intron 1

  ENST00000590239 ; DDX39A-007; intron 1

  ENST00000586993 ; DDX39A-010; intron 1

  ENST00000592632 ; DDX39A-013; intron 1

  ENST00000593008 ; DDX39A-011; intron 1

  ENST00000591275 ; DDX39A-008; intron 1

  ENST00000590696 ; DDX39A-009; intron 1

Database links

• EntrezGene:MIR639
• HGNC:MIR639
• miRBase Tracker:MI0003654

Mature sequence hsa-miR-639

• Accession: MIMAT0003309
• Sequence: 61 - aucgcugcgguugcgagcgcugu - 83
• Deep sequencing: 54 reads, 24 experiments
• Evidence: experimental; SAGE [1]
• Predicted targets:
  • TargetMiner:hsa-miR-639
  • TargetScanVert:hsa-miR-639
  • miRDB:hsa-miR-639
  • microrna.org:hsa-miR-639

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).