Stem-loop sequence hsa-mir-615

Accession

MI0003628 (change log)

Symbol

HGNC:MIR615

Description

Homo sapiens miR-615 stem-loop

Gene family

MIPF0000342; mir-615

Literature search

29 open access papers mention hsa-mir-615
(234 sentences)

Stem-loop

   cuc   ag   c          -uc     u        cu    g ug 
5'    ggg  ggg gggagggggg   cccgg gcucggau  cgag g  c
      |||  ||| ||||||||||   ||||| ||||||||  |||| |  u
3'    ccc  ccc cccuucuccc   ggguc cgagccug  gcuu u  u
   ccc   aa   -          ucu     -        --    g ua 

Deep sequencing

10888 reads, 117 reads per million, 141 experiments

Confidence

Annotation confidence: high

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Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr12: 54033950-54034045 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000407401 ; ATP5G2-009; intron 1

  ENST00000550241 ; ATP5G2-009; intron 1

Database links

• EntrezGene:MIR615
• HGNC:MIR615
• RNAcentral:URS000070789A_9606
• miRBase Tracker:MI0003628

Mature sequence hsa-miR-615-5p

• Accession: MIMAT0004804
• Sequence: 18 - ggggguccccggugcucggauc - 39
• Deep sequencing: 820 reads, 60 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00004D8280_9606
• Predicted targets:
  • TargetMiner:hsa-miR-615-5p
  • TargetScanVert:hsa-miR-615-5p
  • miRDB:hsa-miR-615-5p
  • microrna.org:hsa-miR-615-5p

Mature sequence hsa-miR-615-3p

• Accession: MIMAT0003283
• Previous IDs: hsa-miR-615
• Sequence: 61 - uccgagccugggucucccucuu - 82
• Deep sequencing: 9902 reads, 130 experiments
• Evidence: experimental; RT-PCR [1], SAGE [1], cloned [2]
• Database links:
  • RNAcentral:URS00003D5391_9606
• Predicted targets:
  • TargetMiner:hsa-miR-615-3p
  • TargetScanVert:hsa-miR-615-3p
  • miRDB:hsa-miR-615-3p
  • microrna.org:hsa-miR-615-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).