Stem-loop sequence hsa-mir-551b

Accession

MI0003575 (change log)

Symbol

HGNC:MIR551B

Description

Homo sapiens miR-551b stem-loop

Gene family

MIPF0000360; mir-551

Literature search

20 open access papers mention hsa-mir-551b
(36 sentences)

Stem-loop

   agaugugc    c     ca          cg     - -aga    gug 
5'         ucuc uggcc  ugaaaucaag  ugggu g    ccug   c
           |||| |||||  ||||||||||  ||||| |    ||||    
3'         agag gucgg  acuuugguuc  accca c    gggc   a
   ----aaua    u     ag          au     g ggaa    aag 

Deep sequencing

18074 reads, 70.1 reads per million, 97 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr3: 168551854-168551949 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR551B
• HGNC:MIR551B
• RNAcentral:URS000075D680_9606
• miRBase Tracker:MI0003575

Mature sequence hsa-miR-551b-5p

• Accession: MIMAT0004794
• Previous IDs: hsa-miR-551b*
• Sequence: 22 - gaaaucaagcgugggugagacc - 43
• Deep sequencing: 417 reads, 35 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS000025A6B4_9606
• Predicted targets:
  • TargetMiner:hsa-miR-551b-5p
  • TargetScanVert:hsa-miR-551b-5p
  • miRDB:hsa-miR-551b-5p
  • microrna.org:hsa-miR-551b-5p

Mature sequence hsa-miR-551b-3p

• Accession: MIMAT0003233
• Previous IDs: hsa-miR-551b
• Sequence: 61 - gcgacccauacuugguuucag - 81
• Deep sequencing: 17620 reads, 91 experiments
• Evidence: experimental; Microarray [1], RT-PCR [1], SAGE [1], cloned [2]
• Database links:
  • RNAcentral:URS000008C563_9606
• Predicted targets:
  • TargetMiner:hsa-miR-551b-3p
  • TargetScanVert:hsa-miR-551b-3p
  • miRDB:hsa-miR-551b-3p
  • microrna.org:hsa-miR-551b-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).