Stem-loop sequence hsa-mir-545

AccessionMI0003516 (change log)
Symbol HGNC:MIR545
DescriptionHomo sapiens miR-545 stem-loop
Gene family MIPF0000098; mir-95
Literature search

11 open access papers mention hsa-mir-545
(18 sentences)

   cccag    ------g   a         - u            a  a     auaaa 
5'      ccug       cac uuaguaggc c caguaaauguuu uu gauga     u
        ||||       ||| ||||||||| | |||||||||||| || |||||     g
3'      ggac       gug aaucguccg g guuauuuacaaa ga cuacu     a
   -----    accucga   a         u u            c  -     cagua 
Get sequence
Deep sequencing
5414 reads, 11.7 reads per million, 103 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The 5' end of the miRNA may be offset with respect to previous annotations.

Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chrX: 74287104-74287209 [-]
OTTHUMT00000394108 ; ABCB7-009; intron 6
OTTHUMT00000394107 ; ABCB7-006; intron 11
OTTHUMT00000394029 ; ABCB7-005; intron 11
OTTHUMT00000057273 ; ABCB7-001; intron 12
OTTHUMT00000057274 ; ABCB7-002; intron 12
ENST00000534570 ; ABCB7-009; intron 6
ENST00000339447 ; ABCB7-006; intron 11
ENST00000529949 ; ABCB7-005; intron 11
ENST00000253577 ; ABCB7-001; intron 12
ENST00000373394 ; ABCB7-002; intron 12
Clustered miRNAs
< 10kb from hsa-mir-545
hsa-mir-374achrX: 74287286-74287357 [-]
hsa-mir-545chrX: 74287104-74287209 [-]
Database links

Mature sequence hsa-miR-545-5p

Accession MIMAT0004785
Previous IDshsa-miR-545*

25 - 


 - 46

Get sequence
Deep sequencing1696 reads, 70 experiments
Evidence experimental; cloned [2]
Database links
Predicted targets

Mature sequence hsa-miR-545-3p

Accession MIMAT0003165
Previous IDshsa-miR-545

63 - 


 - 84

Get sequence
Deep sequencing3629 reads, 80 experiments
Evidence experimental; cloned [1-2]
Database links
Predicted targets


PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).