Stem-loop sequence hsa-mir-514a-1

Accession

MI0003198 (change log)

Previous IDs

hsa-mir-514-1

Symbol

HGNC:MIR514A1

Description

Homo sapiens miR-514a-1 stem-loop

Gene family

MIPF0000130; mir-506

Literature search

9 open access papers mention hsa-mir-514a-1
(60 sentences)

Stem-loop

   aac    u   -    g   c      -    g    a      u  aua 
5'    augu guc ugug uac cuacuc ugga agug caauca gu   a
      |||| ||| |||| ||| |||||| |||| |||| |||||| ||    
3'    ugca cag acgc aug gaugag gucu ucac guuagu ua   u
   gca    -   u    a   a      u    -    a      u  aau 

Deep sequencing

206968 reads, 431 reads per million, 115 experiments

Confidence

Annotation confidence: high

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Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 147279247-147279344 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-514a-1

• hsa-mir-514a-3: chrX: 147284641-147284728 [-]
• hsa-mir-514a-2: chrX: 147281943-147282030 [-]
• hsa-mir-514a-1: chrX: 147279247-147279344 [-]
• hsa-mir-510: chrX: 147272335-147272408 [-]

Database links

• EntrezGene:MIR514-1
• HGNC:MIR514A1
• RNAcentral:URS000075E537_9606
• miRBase Tracker:MI0003198

Mature sequence hsa-miR-514a-5p

• Accession: MIMAT0022702
• Sequence: 22 - uacucuggagagugacaaucaug - 44
• Deep sequencing: 16176 reads, 81 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000042B7FA_9606
• Predicted targets:
  • TargetMiner:hsa-miR-514a-5p
  • TargetScanVert:hsa-miR-514a-5p
  • miRDB:hsa-miR-514a-5p

Mature sequence hsa-miR-514a-3p

• Accession: MIMAT0002883
• Previous IDs: hsa-miR-514
• Sequence: 59 - auugacacuucugugaguaga - 79
• Deep sequencing: 604578 reads, 91 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Database links:
  • RNAcentral:URS00001AADF2_9606
• Predicted targets:
  • TargetMiner:hsa-miR-514a-3p
  • TargetScanVert:hsa-miR-514a-3p
  • miRDB:hsa-miR-514a-3p
  • microrna.org:hsa-miR-514a-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).