Stem-loop sequence hsa-mir-520h

Accession

MI0003175 (change log)

Symbol

HGNC:MIR520H

Description

Homo sapiens miR-520h stem-loop

Gene family

MIPF0000020; mir-515

Literature search

44 open access papers mention hsa-mir-520h
(94 sentences)

Stem-loop

        u  u     cc        -        uc     guugu 
5' uccca gc gugac  ucuagagg aagcacuu  uguuu     c
   ||||| || |||||  |||||||| ||||||||  |||||     u
3' agggu ug cauug  agauuucc uucgugaa  acaaa     g
        u  u     --        c        --     aaaga 

Deep sequencing

1583 reads, 18.6 reads per million, 59 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 53742512-53742599 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000464278 ; ZNF677-010; exon 1

  OTTHUMT00000464189 ; ZNF677-001; intron 4

  OTTHUMT00000464190 ; ZNF677-004; intron 4

  ENST00000599328 ; ZNF677-010; exon 1

  ENST00000598513 ; ZNF677-001; intron 4

  ENST00000594517 ; ZNF677-004; intron 4

  ENST00000333952 ; ZNF677-201; intron 4

Clustered miRNAs

< 10kb from hsa-mir-520h

• hsa-mir-518d: chr19: 53734877-53734963 [+]
• hsa-mir-516b-1: chr19: 53736845-53736934 [+]
• hsa-mir-518a-2: chr19: 53739333-53739419 [+]
• hsa-mir-517c: chr19: 53741313-53741407 [+]
• hsa-mir-520h: chr19: 53742512-53742599 [+]
• hsa-mir-521-1: chr19: 53748636-53748722 [+]
• hsa-mir-522: chr19: 53751211-53751297 [+]
• hsa-mir-519a-1: chr19: 53752397-53752481 [+]

Database links

• EntrezGene:MIR520H
• HGNC:MIR520H
• miRBase Tracker:MI0003175

Mature sequence hsa-miR-520h

• Accession: MIMAT0002867
• Sequence: 55 - acaaagugcuucccuuuagagu - 76
• Deep sequencing: 1558 reads, 62 experiments
• Evidence: experimental; array-cloned [1]
• Predicted targets:
  • TargetMiner:hsa-miR-520h
  • TargetScanVert:hsa-miR-520h
  • miRDB:hsa-miR-520h
  • microrna.org:hsa-miR-520h

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).