miRBase entry: mml-mir-93

Stem-loop mml-mir-93


Accession
MI0003074
Description
Macaca mulatta mml-mir-93 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
3 open access papers mention mml-mir-93
(3 sentences)

Sequence

144386 reads, 1590 reads per million, 9 experiments
cugggggcuccAAAGUGCUGUUCGUGCAGGUAGugugauuaaccgaccuACUGCUGAGCUAGCACUUCCCGagcccccag
((((((((((..((((((((((((.((((.(((.((.........)))))))))))))).)))))))...))))))))))

Structure
          -cA       -     U    G   u  gau 
cugggggcuc   AAGUGCU GUUCG GCAG UAG gu   u
||||||||||   ||||||| ||||| |||| ||| ||   a
gacccccgaG   UUCACGA CGAGU CGUC Auc ca   a
          CCC       U     -    -   -  gcc 


Annotation confidence High
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr3: 125615179-125615258 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mml-mir-93
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-93-5p

Accession MIMAT0002773
Description Macaca mulatta mml-miR-93-5p mature miRNA
Sequence 12 - AAAGUGCUGUUCGUGCAGGUAG - 33
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-93-3p

Accession MIMAT0026602
Description Macaca mulatta mml-miR-93-3p mature miRNA
Sequence 50 - ACUGCUGAGCUAGCACUUCCCG - 71
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45