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miRBase |
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Stem-loop sequence ssc-mir-139 |
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Accession | MI0002453 (change log) | ||||
Description | Sus scrofa miR-139 stem-loop | ||||
Gene family | MIPF0000117; mir-139 | ||||
Literature search |
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5 open access papers mention ssc-mir-139 | ||||
Stem-loop |
gug - u a g gg 5' uauucua cag gc cgugucuccagu u c ||||||| ||| || |||||||||||| | u 3' augaggu guc cg gcgcagaggucg a c -ca u c - g gg |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
Mature sequence ssc-miR-139-5p |
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Accession | MIMAT0002159 |
Previous IDs | ssc-miR-139 |
Sequence |
7 - ucuacagugcacgugucuccag - 28 |
Deep sequencing | 416 reads, 14 experiments |
Evidence | experimental; Illumina [2,4-5], cloned [3] |
Mature sequence ssc-miR-139-3p |
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Accession | MIMAT0022921 |
Sequence |
43 - uggagacgcggcccuguuggagu - 65 |
Deep sequencing | 77 reads, 15 experiments |
Evidence | experimental; Illumina [4] |
References |
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1 |
PMID:15885146
"Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing"
BMC Genomics. 6:70(2005).
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2 |
PMID:19917043
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
Anim Genet. 41:159-168(2010).
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3 |
PMID:20180025
"Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue"
Mol Biol Rep. 37:3567-3574(2010).
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4 |
PMID:21312241
"MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing"
J Cell Biochem. 112:1318-1328(2011).
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5 |
PMID:24499489
"Exploration of microRNAs in porcine milk exosomes"
BMC Genomics. 15:100(2014).
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