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miRBase |
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Stem-loop sequence ssc-mir-136 |
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Accession | MI0002452 (change log) | |||||||
Description | Sus scrofa miR-136 stem-loop | |||||||
Gene family | MIPF0000099; mir-136 | |||||||
Literature search |
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7 open access papers mention ssc-mir-136 | |||||||
Stem-loop |
u g c uuu uuc 5' gagcccuc gaggacuc auuug ugaugaugga u |||||||| |||||||| ||||| |||||||||| u 3' cuugggag cuucugag uaaac gcuacuaccu a u a - ucu cgc |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence ssc-miR-136-5p |
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Accession | MIMAT0002158 |
Sequence |
15 - acuccauuuguuuugaugaugga - 37 |
Deep sequencing | 50 reads, 9 experiments |
Evidence | experimental; Illumina [2-3] |
Mature sequence ssc-miR-136-3p |
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Accession | MIMAT0037320 |
Sequence |
49 - caucaucgucucaaaugagucu - 70 |
Deep sequencing | 113 reads, 12 experiments |
Evidence | experimental; Illumina [4] |
References |
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1 |
PMID:15885146
"Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing"
BMC Genomics. 6:70(2005).
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2 |
PMID:19917043
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
Anim Genet. 41:159-168(2010).
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3 |
PMID:21312241
"MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing"
J Cell Biochem. 112:1318-1328(2011).
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4 |
PMID:25230983
"The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing"
J Appl Genet. 56:239-252(2015).
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