Stem-loop sequence ssc-mir-124a-2

AccessionMI0002450 (change log)
Previous IDsssc-mir-124a
DescriptionSus scrofa miR-124a-2 stem-loop
Gene family MIPF0000021; mir-124
Literature search

15 open access papers mention ssc-mir-124a-2
(80 sentences)

Stem-loop 
   a      uc   cc        a   ga        uaaau 
5'  ggccuc  ucu  guguucac gcg  ccuugauu     g
    ||||||  |||  |||||||| |||  ||||||||     u
3'  ucgggg  aga  cguaagug cgc  ggaauuaa     c
   g      ua   ac        g   ac        cauac
Get sequence
Deep sequencing
13 reads, 0 reads per million, 6 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr14: 14443005-14443089 [-]
intergenic
Database links

Mature sequence ssc-miR-124a

Accession MIMAT0002156
Sequence

53 -  

uaaggcacgcggugaaugcca

 - 73

Get sequence
Deep sequencing26 reads, 6 experiments
Evidence experimental; 454 [1], Illumina [2]

References

1
PMID:15885146 "Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing" Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L BMC Genomics. 6:70(2005).
2
PMID:19196471 "Cloning, characterization and expression analysis of porcine microRNAs" Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R BMC Genomics. 10:65(2009).
3
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).